workflow-0
Version 1

Download RO-Crate Run on Galaxy
Workflow Type: Galaxy

Generate annotated gb for fragments and add them to DB

SEEK ID: https://workflowhub.eu/workflows/1768?version=1

Inputs

ID Name Description Type
DB Column Contains Annotation For gb Files #main/DB Column Contains Annotation For gb Files n/a
  • string
DB Column Contains Sequence For gb Files #main/DB Column Contains Sequence For gb Files n/a
  • string
DB IDs Column Name #main/DB IDs Column Name column contains fragments names
  • string
DB Table Name #main/DB Table Name n/a
  • string
DB URI #main/DB URI n/a
  • string
Enable save to DB #main/Enable save to DB n/a
  • boolean
Fragments GenBank #main/Fragments GenBank n/a
  • array containing
    • File

Steps

ID Name Description
7 Evaluate Manufacturability toolshed.g2.bx.psu.edu/repos/tduigou/evaluate_manufacturability/evaluate_manufacturability/0.1.0+galaxy0
8 Save Sequence Data In DB toolshed.g2.bx.psu.edu/repos/tduigou/seq_to_db/seq_to_db/0.2.0+galaxy1

Outputs

ID Name Description Type
Evaluate Manufacturability (gb) #main/Evaluate Manufacturability (gb) n/a
  • File
Manufacturability Report (PDF) #main/Manufacturability Report (PDF) n/a
  • File
Manufacturability Report (tsv) #main/Manufacturability Report (tsv) n/a
  • File
saving report #main/saving report n/a
  • File

Version History

Version 1 (earliest) Created 30th Jun 2025 at 11:04 by ramiz khaled

No revision comments

Open master 45b5ffc
help Creators and Submitter
Creators
Not specified
Submitter
License
Creative Commons Attribution 4.0 International
Activity

Views: 10   Downloads: 2   Runs: 2

Created: 30th Jun 2025 at 11:04

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Total size: 195 KB
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