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Workflow type
Snakemake1
Submitter
Tom Brown1
Team
Biodiversity Genomics Europe (general)1
Intergalactic Workflow Commission (IWC)6
Australian BioCommons3
Galaxy Australia3
ERGA Assembly3
NanoGalaxy2
Integrated and Urban Plant Pathology Laboratory2
Galaxy Training Network1
UNLOCK1
ERGA Annotation1
Tree of Life Genome Assembly1
Bioinformatics Laboratory for Genomics and Biodiversity (LBGB)1
NHM Clark group1
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Creator
Tom Brown1
Purge dups
This snakemake pipeline is designed to be run using as input a contig-level genome and pacbio reads. This pipeline has been tested with snakemake v7.32.4. Raw long-read sequencing files and the input contig genome assembly must be given in the config.yaml file. To execute the workflow run:
snakemake --use-conda --cores N
Or configure the cluster.json and run using the ./run_cluster command
