Workflows

What is a Workflow?
10 Workflows visible to you, out of a total of 10
Stable

Alignment, assembly and annotation of RNQSEQ reads using TOPHAT (without filtering out host reads).

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Alignment, assembly RNASEQ reads and annotation of generated transcripts.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Alignment, assembly and annotation of RNASEQ reads as well as annotation of generated transcripts.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Alignment, assembly and annotation of generated transcripts from RNASEQ reads.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in

This is a proposed standard operating procedure for genomic variant detection using SAMTools.

It is hoped to be effective and useful for getting SARS-CoV-2 genome variants.

It uses Illumina RNASEQ reads and genome sequence.

Type: Common Workflow Language

Creators: None

Submitter: Ambarish Kumar

Stable

Detects SNPs and INDELs using VARSCAN2.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Detects SNPs and INDELs.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in

This is a proposed standard operating procedure for genomic variant detection using GATK4.

It is hoped to be effective and useful for getting SARS-CoV-2 genome variants.

It uses Illumina RNASEQ reads and genome sequence.

Type: Common Workflow Language

Creator: Ambarish Kumar

Submitter: Ambarish Kumar

Stable

Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in

This is a proposed standard operating procedure for genomic variant detection using VARSCAN.

It is hoped to be effective and useful for getting SARS-CoV-2 genome variants.

It uses Illumina RNASEQ reads and genome sequence.

Type: Common Workflow Language

Creator: Ambarish Kumar

Submitter: Ambarish Kumar

Stable

Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in

This is a proposed standard operating procedure for genomic variant detection using GATK4.

It is hoped to be effective and useful for getting SARS-CoV-2 genome variants.

It uses Illumina RNASEQ reads and genome sequence.

Type: Common Workflow Language

Creator: Ambarish Kumar

Submitter: Ambarish Kumar

Powered by
(v.1.16.0-main)
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH