Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Workflow type
Snakemake1
Submitter
Tim Booth1
Team
Edinburgh Genomics1
Space
Independent Teams1
Creator
Tim Booth1
Topic annotations
Sequencing1
Operation annotations
Conversion1
Maturity
Stable1
1
Workflow visible to you, out of a total of 1
Stable
pod5_by_pore
A Snakemake workflow to take the POD5 files produced by an Oxford Nanopore sequencing run and re-batch them by pore (ie. by channel).
This is useful if you want to run duplex basecalling because you can meaningfully run "dorado duplex" on a single (or a subset of) the POD5 files.
Know issues
It is assumed all POD5 input files are from the same sequencing run, but this is not checked.