Workflow Type: Snakemake
Stable

pod5_by_pore

A Snakemake workflow to take the POD5 files produced by an Oxford Nanopore sequencing run and re-batch them by pore (ie. by channel).

This is useful if you want to run duplex basecalling because you can meaningfully run "dorado duplex" on a single (or a subset of) the POD5 files.

Know issues

It is assumed all POD5 input files are from the same sequencing run, but this is not checked.

Version History

master @ 6b1da33 (latest) Created 11th Sep 2024 at 14:31 by Tim Booth

Try using a non-frozen environment.


Frozen master 6b1da33

master @ b2977c5 (earliest) Created 24th May 2024 at 15:28 by Tim Booth

Add a diagram (dot format)


Frozen master b2977c5
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Views: 929   Downloads: 151

Created: 24th May 2024 at 15:28

Last updated: 24th May 2024 at 15:32

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