Workflow Type:  Snakemake
        
  
            
              
                
                     
                
              
            
        
        
        
      
  
    
      
        
      
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pod5_by_pore
A Snakemake workflow to take the POD5 files produced by an Oxford Nanopore sequencing run and re-batch them by pore (ie. by channel).
This is useful if you want to run duplex basecalling because you can meaningfully run "dorado duplex" on a single (or a subset of) the POD5 files.
Know issues
It is assumed all POD5 input files are from the same sequencing run, but this is not checked.
Version History
master @ 6b1da33 (latest) Created 11th Sep 2024 at 14:31 by Tim Booth
Try using a non-frozen environment.
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    master @ b2977c5 (earliest) Created 24th May 2024 at 15:28 by Tim Booth
Add a diagram (dot format)
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Views: 3325 Downloads: 865
Created: 24th May 2024 at 15:28
Last updated: 24th May 2024 at 15:32
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 https://orcid.org/0000-0003-2470-9519
 https://orcid.org/0000-0003-2470-9519
