TRON gGmbH
OverviewTRON (Translationale Onkologie an der Universitätsmedizin der Johannes Gutenberg-Universität Mainz gemeinnützige GmbH) is an independent biopharmaceutical non-profit translational research organization pursuing new diagnostics and drugs for the treatment of cancer and other diseases with high medical need. We focus our transdisciplinary competencies in genomics and immunology to 1) develop novel platforms for the identification and validation of “omics”-based biomarkers and 2) for harnessing and modulating immune system components, for use in personalized therapies. Partnering with academia and industry, TRON executes research at the leading edge to support innovative drug design for human health.
Space: Independent Teams
SEEK ID: https://workflowhub.eu/projects/124
Public web page: https://github.com/TRON-Bioinformatics
Organisms: No Organisms specified
WorkflowHub PALs: No PALs for this Team
Team created: 17th Jan 2023
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https://orcid.org/0000-0003-2739-1315
A space managed by WorkflowHub administrators for teams that don't want/need to manage their own space.
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Web page: Not specified
TronFlow BAM preprocessing pipeline
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TronFlow alignment pipeline
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CoVigator pipeline: variant detection pipeline for Sars-CoV-2
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TronFlow is an open source collection of computational workflows originally conceived for tumor-normal somatic variant calling over whole exome data and the manipulation of BAM and VCF files with the aim of having comparable and analysis-ready data. Over time, we have extended it to germline variant calling, copy numbers and other related technologies and analyses.
Its modular architecture covers different analytical and methodological use cases that allow analysing FASTQ files into analysis-ready ...
Maintainers: Pablo Riesgo Ferreiro
Number of items: 2
Tags: Nextflow, variant calling, VCF, Mutect2, HaplotyeCaller, Strelka2, Alignment, Annotation
