Workflows

What is a Workflow?
355 Workflows visible to you, out of a total of 386
Stable

Scipion is a workflow engine mostly for Cryo-Electron Microscopy image processing. In this extremely simple workflow, we load the Relion 3.0 tutorial data and process it to 2.9A resolution.

Type: Scipion

Creators: None

Submitter: Carlos Oscar Sorzano Sanchez

Work-in-progress

This WF is based on the official Covid19-Galaxy assembly workflow as available from https://covid19.galaxyproject.org/genomics/2-assembly/ . It has been adapted to suit the needs of the analysis of metagenomics sequencing data. Prior to be submitted to INDSC databases, these data need to be cleaned from contaminant reads, including reads of possible human origin.

The assembly of the SARS-CoV-2 genome is performed using both the Unicycler and the SPAdes assemblers, similar to the original WV.

To ...

Type: Galaxy

Creators: None

Submitter: Matteo Chiara

Stable

Abstract CWL Automatically generated from the Galaxy workflow file: CLM-FATES_ ALP1 simulation (5 years)

Type: Galaxy

Creators: None

Submitter: Anne Fouilloux

Metagenomics: taxa classification

Type: Galaxy

Creator: Milad Miladi

Submitter: Willem de Koning

Genome assembly: Unicycler-based WF for Klebsiella pneumoniae [Wick et al. Microbial genomics 2017]

Type: Galaxy

Creator: Milad Miladi

Submitter: Willem de Koning

Genome assembly: Flye-based WF for highly repetitive genomes [Schmid et al. NAR 2018]

Type: Galaxy

Creator: Milad Miladi

Submitter: Willem de Koning

Basic workflows inspired by the Nanopolish tutorials

Type: Galaxy

Creator: Milad Miladi

Submitter: Willem de Koning

Stable

Galaxy-E (ecology.usegalaxy.eu) workflow to calculate species presence / absence, community metrics and compute generalized linear models to identify effects and significativity of these effects on biodiversity.

Work-in-progress

Description: SSP-based RCP scenario with high radiative forcing by the end of century. Following approximately RCP8.5 global forcing pathway with SSP5 socioeconomic conditions. Concentration-driven. Rationale: the scenario represents the high end of plausible future pathways. SSP5 is the only SSP with emissions high enough to produce the 8.5 W/m2 level of forcing in 2100.

This workflow is answering to the following scientific question:

  • Is it worth investing in artificial snowmaking equipment ...

Type: Jupyter

Creators: None

Submitter: Anne Fouilloux

Work-in-progress

Abstract CWL Automatically generated from the Galaxy workflow file: Workflow with Copernicus Essential Climate Variable - select and plot

Type: Galaxy

Creators: None

Submitter: Anne Fouilloux

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