Proteomics CEITEC

KNIME workflow describing the analysis of mass spectrometry dataset related to the publication "Multisite phosphorylation of intrinsically disordered region of DVL facilitates Wnt signaling". Workflow was built using the KNIME software container environment, version 4.7.7, which can be created using "docker pull cfprot/knime:4.7.7" command in Docker.

Briefly, it contains the contaminants removal, log2 intensities transformation, data filtering, normalization, imputation of missing values and ...

KNIME workflow describing the analysis of mass spectrometry dataset related to the publication "Anti-Cancer potential of a new Derivative of Caffeic Acid Phenethyl Ester targeting the centrosome". Workflow was built using the KNIME software container environment, version 4.1.3a, which can be created using "docker pull cfprot/knime:4.1.3a" command in Docker. Please consult Github pages for more information on how to use the ...

KNIME workflow describing the analysis of mass spectrometry dataset related to the publication "Armed with PRICKLE(3)s: Stabilizing WNT/PCP complexes against RNF43-mediated ubiquitination". Workflow was built using the KNIME software container environment, version 4.7.7a, which can be created using "docker pull cfprot/knime:4.7.7a" command in Docker. The input data for the KNIME workflow (the report.tsv from DIA-NN) can be found on PRIDE repository under the identifier PXD057854.

KNIME workflow describing the analysis of mass spectrometry dataset related to the publication "Proximity interactomics identifies RAI14, EPHA2 and PHACTR4 as essential components of Wnt/planar cell polarity pathway in vertebrates". Workflow was built using the KNIME software container environment, version 4.7.7a, which can be created using "docker pull cfprot/knime:4.7.7a" command in Docker. The input data for the KNIME workflow (the report.tsv from DIA-NN) can be found on PRIDE repository under ...