Work-in-progress
SLURM HPC Cromwell implementation of GATK4 germline variant calling pipeline
See the GATK website for more information on this toolset
Assumptions
- Using hg38 human reference genome build
- Running using HPC/SLURM scheduling. This repo was specifically tested on Pawsey Zeus machine, primarily running in the
/scratch
partition.
- Starting from short-read Illumina paired-end fastq files as input
Dependencies
The following versions have been
...
Type: Workflow Description Language
Creators: None
Submitter: Sarah Beecroft