Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Tool
GenomeScope 2.01
BUSCO5
FastQC5
MultiQC5
Stacks5
Bandage3
Bwa-mem23
Minimap23
QUAST3
SAMtools3
BEDTools2
fastp2
Flye2
Racon2
StringTie2
Biopython1
compute_sequence_length1
Cutadapt1
FASTX-Toolkit1
FGENESH1
gfastats1
ggplot21
HiFiAdapterFilt1
HISAT21
Medaka1
Merqury1
NanoPlot1
picard_samtofastq1
purge_dups1
RepeatMasker1
RepeatModeler1
seqtk1
TransDecoder1
Trimmomatic1
YaHS1
More...
Workflow type
Galaxy1
Submitter
Anna Syme1
Space
Australian BioCommons1
Creator
Anna Syme1
Topic annotations
Sequence assembly1
Operation annotations
Sequencing quality control1
Kmer counting step, can run alone or as part of a combined workflow for large genome assembly.
- What it does: Estimates genome size and heterozygosity based on counts of kmers
- Inputs: One set of short reads: e.g. R1.fq.gz
- Outputs: GenomeScope graphs
- Tools used: Meryl, GenomeScope
- Input parameters: None required
- Workflow steps: The tool meryl counts kmers in the input reads (k=21), then converts this into a histogram. GenomeScope: runs a model on the histogram; reports estimates. k-mer ...
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