WorkflowHub Knowledge Graph

This RO-Crate contains a knowledge graph built from RO-Crates on WorkflowHub, enriched with metadata from additional sources. The source code used to create the knowledge graph, including the enrichments, is also included.

This version: 2025-08-29

Also published on Zenodo: https://doi.org/10.5281/zenodo.16995374

Creators: Eli Chadwick, Oliver Woolland, Alexander Hambley, Stian Soiland-Reyes, Volodymyr Savchenko

Submitter: Eli Chadwick

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The BGE guide to using WorkflowHub

This is a project specific guide for the Bioiversity Genomics Europe (BGE project use of WorkflowHub.

Creator: Stian Soiland-Reyes

Submitter: Stian Soiland-Reyes

DOI: 10.48546/workflowhub.sop.15.1

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BioDT Guide to using WorkflowHub

The BioDT project is producing and maintaining workflows. We need to register those workflows in WorkflowHub:

  1. To give visibility to the workflows created by the project and by the different networks and communities within the project
  2. To give visibility to the workflows used by project that were created
  3. To share workflows across the project, within project networks and externally
  4. To credit and cite the people making the workflows and the networks to which they ...

Creator: Stian Soiland-Reyes

Submitter: Stian Soiland-Reyes

DOI: 10.48546/workflowhub.sop.14.1

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EuroScienceGateway Guide to using WorkflowHub

The EuroScienceGateway project is producing and maintaining workflows. We need to register those workflows in WorkflowHub:

  • To give visibility to the workflows created by the project and by the different networks and communities within the project
  • To give visibility to the workflows used by project that were created
  • To share workflows across the project, within project networks and externally
  • To credit and cite the people making the workflows and the ...

Creators: Stian Soiland-Reyes, Carole Goble, Finn Bacall

Submitter: Stian Soiland-Reyes

DOI: 10.48546/workflowhub.sop.8.2

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The BY-COVID Guide to using WorkflowHub

The BY-COVID project is producing workflows. We need to register those workflows in WorkflowHub:

  1. To give visibility to the workflows created by the project and by the different networks and communities within the project
  2. To give visibility to the workflows used by project that were created
  3. To share workflows across the project, within project networks and externally
  4. To credit and cite the people making the workflows and the networks to which they belong
  5. To track the versions of ...

Creators: Carole Goble, Finn Bacall, Stian Soiland-Reyes, Andrew Stubbs, Helena Rasche

Submitter: Stian Soiland-Reyes

DOI: 10.48546/workflowhub.sop.10.1

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A guide to using WorkflowHub

If your research project is producing workflows, they should be registered in WorkflowHub:

  • To give visibility to the workflows created by the project, and by the different networks and communities within the project
  • To give visibility to the workflows used by project
  • To share workflows across the project, within project networks and externally
  • To credit and cite the people making the workflows, and the networks to which they belong
  • To track the new versions of workflows as they are ...

Creators: Stian Soiland-Reyes, Carole Goble, Finn Bacall, Johan Gustafsson, Rafael Andrade Buono

Submitter: Stian Soiland-Reyes

DOI: 10.48546/workflowhub.sop.13.4

External Link
EuroScienceGateway MS6: Integrated EuroScienceGateway knowledge graph

Abstract (Expand)

Description The Workflowhub Knowledge Graph has been improved and its generation made more robust. When this work was last reported, a complete knowledge graph had been generated but several criticisms …icisms were made. The previous graph was: - Verbose and hard for a human to read or navigate - Had unresolvable URIs as root data entities - Contained many duplicate entries - Contained sparse metadata from only a single source Work has successfully been undertaken to address all of these points. The graph now uses partially resolvable, more human readable, URIs for root data entities. Steps have been added to the generation software to add metadata from additional sources (enrichment) and to remove duplicate entries (consolidation). Several areas of the codebase have been refactored and improved, to help ensure repeatability and longevity. The new knowledge graph still has areas that could be improved. Partially resolvable URIs should be migrated to fully resolvable alternatives. Further enrichment processes should be added which affords greater de-duplication.

Authors: Eli Chadwick, Oliver Woolland, Volodymyr Savchenko, Finn Bacall, Alexander Hambley, José María Fernández González, Armin Dadras, Stian Soiland-Reyes

Date Published: 1st Aug 2025

Publication Type: Tech report

FAIR Computational Workflows

Presented at Swedish eResearch Centre meeting, 13 may 2022

Creator: Carole Goble

Submitter: Carole Goble

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Build WorkflowHub Knowledge Graph
Stable

WorkflowHub Knowledge Graph

A tool to generate a knowledge graph from a source of RO Crates. By default, this tool sources and generates an RDF graph of crates from WorkflowHub.

Docker build and push [![Python linting and ...

Type: Snakemake

Creators: Alexander Hambley, Oliver Woolland, Eli Chadwick, Volodymyr Savchenko, José Mª Fernández, Stian Soiland-Reyes

Submitter: Eli Chadwick

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