2 items tagged with 'sequence annotation'.
Stable
skim2mito
skim2mito is a snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes from low coverage genome skims. The pipeline was designed to work with sequence data from museum collections. However, it should also work with genome skims from recently collected samples.
Contents
- Setup
- Example data
- Input
- Output
- Filtering contaminants
- [Assembly and ...
Created: 12th Mar 2024 at 15:03, Last updated: 7th Oct 2024 at 13:24
Stable
ARA (Automated Record Analysis) : An automatic pipeline for exploration of SRA datasets with sequences as a query
Requirements
-
Docker
-
Please checkout the Docker installation guide.
or
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Mamba package manager
-
Please checkout the mamba or micromamba official installation guide.
-
We prefer
mamba
overconda
since it is faster and uses ...
Created: 31st Jul 2023 at 13:44, Last updated: 31st Jul 2023 at 13:49