Name: K-Means GPU Cache OFF Contact Person: cristian.tatu@bsc.es Access Level: public License Agreement: Apache2 Platform: COMPSs Machine: Minotauro-MN4

K-Means running on GPUs. Launched using 32 GPUs (16 nodes). Parameters used: K=40 and 32 blocks of size (1_000_000, 1200). It creates a block for each GPU. Total dataset shape is (32_000_000, 1200). Version dislib-0.9

Average task execution time: 194 seconds

Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment

Introduction

Phylogeny refers to the evolutionary history and relationship between biological lineages related by common descent. Reticulate evolution refers to the origination of lineages through the complete or partial merging of ancestor lineages. Networks may be used to represent lineage independence events in non-treelike phylogenetic processes.

The methodology for reconstructing networks ...

This is a Nextflow implementaion of the GATK Somatic Short Variant Calling workflow. This workflow can be used to discover somatic short variants (SNVs and indels) from tumour and matched normal BAM files following GATK's Best Practices Workflow. The workflowis currently optimised to run efficiently and at scale on the National Compute Infrastructure, Gadi.

Name: Lanczos SVD Contact Person: support-compss@bsc.es Access Level: public License Agreement: Apache2 Platform: COMPSs Machine: MareNostrum4

Lanczos SVD for computing singular values needed to reach an epsilon of 1e-3 on a matrix of (150000, 150). The input matrix is generated synthetically. This application used dislib-0.9.0