CWL4IncorporateTSSintoGXF

This workflow determines TSS based on the analysis of CAGE-seq data and incorporates TSS information and 5'UTR information calculated based on TSS information into the gene annotation file (gff/gtf). The R package, TSSr, is used to determine TSS.

Requirements

• cwltool

Install using pip

pip install cwltool 

Install using conda

conda create -n cwltool 
conda activate
...

CAGE-seq pipeline