WHALE
Work-in-progress

WHALE: (W)orkflow for (H)uman-genome (A)nalysis of (L)ong-read (E)xperiments

Introduction

WHALE is a bioinformatics pipeline based on Nextflow and nf-core for long-read DNA sequencing analysis. It takes a samplesheet as input and performs quality control, alignment, variant calling and annotation.

Pipeline summary

  1. Read QC (FastQC)
  2. Present QC for raw reads (MultiQC)
  3. Alignment ...

Type: Nextflow

Creators: None

Submitter: Yolanda Benítez Quesada

nf-core/scnanoseq

GitHub Actions CI Status GitHub Actions Linting StatusAWS CI[![Cite ...

Type: Nextflow

Creators: Austyn Trull, Lara Ianov

Submitter: WorkflowHub Bot

nf-core/viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

Type: Nextflow

Creators: Sarai Varona and Sara Monzon, Patel H, Varona S and Monzon S

Submitter: WorkflowHub Bot

nf-core/mag

GitHub Actions CI Status GitHub Actions Linting StatusAWS CI[![Cite with ...

Type: Nextflow

Creators: No author provided, Hadrien Gourlé, Daniel Straub, Sabrina Krakau

Submitter: WorkflowHub Bot

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