1 item tagged with 'BioScanEurope'.
Stable
skim2mito
skim2mito is a snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes from low coverage genome skims. The pipeline was designed to work with sequence data from museum collections. However, it should also work with genome skims from recently collected samples.
Contents
- Setup
- Example data
- Input
- Output
- Filtering contaminants
- [Assembly and ...
Created: 12th Mar 2024 at 15:03, Last updated: 7th Oct 2024 at 13:24