Genomics - Recombination and selection analysis
Version 1

Workflow Type: Galaxy

This workflow employs a recombination detection algorithm (GARD) developed by Kosakovsky Pond et al. and implemented in the hyphy package. More info can be found at https://covid19.galaxyproject.org/genomics/

Click and drag the diagram to pan, double click or use the controls to zoom.

SEEK ID: https://workflowhub.eu/workflows/10?version=1

Inputs

ID	Name	Description	Type
0_Input Dataset	n/a	n/a	File

Steps

ID	Name	Description
1_transeq	n/a	n/a
2_MAFFT	n/a	n/a
3_tranalign	n/a	n/a
4_FASTTREE	n/a	n/a
5_HyPhy-GARD	n/a	n/a
6_HyPhy-aBSREL	n/a	n/a

Version History

Version 1 (earliest) Created 10th Apr 2020 at 14:30 by Bert Droesbeke

Added/updated 3 files

Open master 5c9636b

Creators and Submitter

Creators

Not specified

Additional credit

Dannon Baker, Marius van den Beek, Dave Bouvier, John Chilton, Nate Coraor, Frederik Coppens, Bert Droesbeke, Ignacio Eguinoa, Simon Gladman, Björn Grüning, Delphine Larivière, Gildas Le Corguillé, Andrew Lonie, Nicholas Keener, Sergei Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver

Submitter

Bert Droesbeke

License

MIT License

Activity

Views: 4741 Downloads: 742 Runs: 0

Created: 10th Apr 2020 at 14:30

Genomics - Recombination and selection analysis Version 1