Workflow Type: Shell Script
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Bootstrapping-for-BQSR @ NCI-Gadi is a pipeline for bootstrapping a variant resource to enable GATK base quality score recalibration (BQSR) for non-model organisms that lack a publicly available variant resource. This implementation is optimised for the National Compute Infrastucture's Gadi HPC. Multiple rounds of bootstrapping can be performed. Users can use Fastq-to-bam @ NCI-Gadi and Germline-ShortV @ NCI-Gadi to produce required input files for Bootstrapping-for-BQSR @ NCI-Gadi.
Infrastructure_deployment_metadata: Gadi (NCI)
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Version 1 (earliest) Created 18th Aug 2021 at 00:26 by Tracy Chew
Added/updated 1 files
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Cali Willet
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Sadsad, R., & Chew, T. (2021). Bootstrapping-for-BQSR @ NCI-Gadi. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.153.1
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Views: 3438 Downloads: 341
Created: 18th Aug 2021 at 00:26
Last updated: 7th Sep 2021 at 07:24
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