Bootstrapping-for-BQSR @ NCI-Gadi Version 1
View on GitHub
Download RO-CrateBootstrapping-for-BQSR @ NCI-Gadi is a pipeline for bootstrapping a variant resource to enable GATK base quality score recalibration (BQSR) for non-model organisms that lack a publicly available variant resource. This implementation is optimised for the National Compute Infrastucture's Gadi HPC. Multiple rounds of bootstrapping can be performed. Users can use Fastq-to-bam @ NCI-Gadi and Germline-ShortV @ NCI-Gadi to produce required input files for Bootstrapping-for-BQSR @ NCI-Gadi.
Infrastructure_deployment_metadata: Gadi (NCI)
Version History
Version 1 (earliest) Created 18th Aug 2021 at 00:26 by Tracy Chew
Added/updated 1 files
Open
mastera1dee06
Creators and Submitter
Views: 3502 Downloads: 357
Created: 18th Aug 2021 at 00:26
Last updated: 7th Sep 2021 at 07:24
Tags AttributionsNone
Collections
BioCommons ‘Bring Y...
Related items
Teams: Sydney Informatics Hub
Organizations: The University of Sydney
https://orcid.org/0000-0003-2488-953X
The Australian BioCommons enhances digital life science research through world class collaborative distributed infrastructure. It aims to ensure that Australian life science research remains globally competitive, through sustained strategic leadership, research community engagement, digital service provision, training and support.
Teams: Australian BioCommons, QCIF Bioinformatics, Pawsey Supercomputing Research Centre, Sydney Informatics Hub, Janis, Melbourne Data Analytics Platform (MDAP), Galaxy Australia
Web page: https://www.biocommons.org.au/
The Sydney Informatics Hub is a Core Research Facility of The University of Sydney. We work towards enabling excellence in data and compute intensive research. We provide support, training, and expertise in statistics, data science, artificial intelligence, bioinformatics, software engineering, simulation, visualisation, and research computing. We are creating reusable workflows for bioinformatics on Australia's national supercompute resources & commercial cloud, as an official node of the ...
Space: Australian BioCommons
Public web page: https://www.sydney.edu.au/sydney-informatics-hub
This ARDC and BioCommons sponsored project delivers a key component of BioCommon’s vision for an ecosystem of platforms providing researchers with sophisticated data analysis and digital asset stewardship capabilities. The Bring Your Own Data (BYOD) Platform (https://www.biocommons.org.au/byod-expansion) has enabled highly accessible, highly available, highly scalable analysis and data sharing capabilities for the benefit of life science researchers nationally.
**This WorkflowHub collection ...
