Processed fastq QC
v2.0

View on GitHub Download RO-Crate
Workflow Type: Snakemake
Stable

The workflow main goal is to quality trim reads of input fastq files and to remove adaptors. It can also run Biobloom tools and species detector in order to check for contamination. Finally it runs fastq QC to obtain quality check after trimming. The workflow was designed to be run in the SeqUIa (http://cfb.ceitec.muni.cz/sequia) application.

SEEK ID: https://workflowhub.eu/workflows/1951?version=1

Version History

v2.0 (earliest) Created 5th Sep 2025 at 13:38 by Nicolas Blavet

fix filesender with setuptools


Frozen v2.0 721d8be
help Creators and Submitter
Creators
Not specified
Submitter
Tools
FastQC
Cutadapt
License
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Activity

Views: 595   Downloads: 134

Created: 5th Sep 2025 at 13:38

Annotated Properties
Topic annotations
Operation annotations
help Attributions

None

Total size: 119 KB
Powered by
 (v.1.17.1)
About WorkflowHub | Acknowledgements | Credits | Terms & Conditions | Privacy Policy | Cite us | Contact us
Copyright © 2008 - 2025 The University of Manchester and HITS gGmbH