Bioinformatics Core CEITEC

The workflow main goal is to quality trim reads of input fastq files and to remove adaptors. It can also run Biobloom tools and species detector in order to check for contamination. Finally it runs fastq QC to obtain quality check after trimming. The workflow was designed to be run in the SeqUIa (http://cfb.ceitec.muni.cz/sequia) application.

The workflow main goal is to check the quality of input fastq files after sequencing and demultiplexing. Optionaly it can check for most abundant adaptor sequences. It can also merge fastq files belonging from the same samples after resequencing prior to quality check. The workflow was designed to be run in the SeqUIa (http://cfb.ceitec.muni.cz/sequia) application.