Count Feature RNA
v2.0

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Workflow Type: Snakemake
Stable

The workflow main goal is to count reads aligned or pseudo-aligned to reference genome annotation using featureCount, HTSeq-count, RSEM, Kallisto or Salmon. Finally it runs Multi QC to gather tool metrics. The workflow was designed to be run in the SeqUIa (http://cfb.ceitec.muni.cz/sequia) application.

SEEK ID: https://workflowhub.eu/workflows/1957?version=1

Version History

v2.0 (earliest) Created 19th Sep 2025 at 09:47 by Nicolas Blavet

Revise README for better structure and details

Updated README to improve clarity and organization of content.


Frozen v2.0 27d30bf
help Creators and Submitter
Creators
Not specified
Submitter
Tools
FeatureCounts
HTSeq
htseqcount
RSEM
kallisto
Salmon
License
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Activity

Views: 507   Downloads: 133

Created: 19th Sep 2025 at 09:47

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