Alignment RNA v2.0
View on GitHub
Download RO-Crate
Workflow Type: Snakemake
Frozen
Stable
The workflow main goal is to align RNA-Seq read files with STAR and to check for duplicates using either Picard Markduplicates or UMI-tools. Finally it runs Multi QC to gather tool metrics. The workflow was designed to be run in the SeqUIa (http://cfb.ceitec.muni.cz/sequia) application.
Version History
v2.0 (earliest) Created 19th Sep 2025 at 08:51 by Nicolas Blavet
Change processed_fastq to input directory and add mapped
Frozen
v2.0d9da598
Creators and Submitter
Activity
Views: 508 Downloads: 138
Created: 19th Sep 2025 at 08:51
TagsThis item has not yet been tagged.
AttributionsNone
Related items
https://orcid.org/0000-0003-2199-9119
Advanced Spaces list for this Workflow with search and filtering
No description specified
Teams: Bioinformatics Core CEITEC
Web page: https://www.ceitec.eu/bioinformatics-core-facility/cf284
Advanced Teams list for this Workflow with search and filtering
No description specified
Space: Bioinformatics Core CEITEC
Public web page: https://www.ceitec.eu/bioinformatics-core-facility/cf284
