RetroSynthesis
Version 1

Download RO-Crate Run on Galaxy
Workflow Type: Galaxy

Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools

SEEK ID: https://workflowhub.eu/workflows/2004?version=1

Inputs

ID Name Description Type
Target to produce #main/Target to produce n/a
  • string

Steps

ID Name Description
1 SBML model toolshed.g2.bx.psu.edu/repos/tduigou/get_sbml_model/get_sbml_model/0.0.3
2 RRules Parser toolshed.g2.bx.psu.edu/repos/tduigou/rrparser/rrparser/2.5.2+galaxy0
3 Sink from SBML toolshed.g2.bx.psu.edu/repos/tduigou/rptools_rpextractsink/rptools_rpextractsink/6.5.0+galaxy0
4 Retropath2.0 toolshed.g2.bx.psu.edu/repos/tduigou/retropath2/retropath2/2.3.0
5 RP2paths toolshed.g2.bx.psu.edu/repos/tduigou/rp2paths/rp2paths/1.5.0
6 Complete Reactions toolshed.g2.bx.psu.edu/repos/tduigou/rptools_rpcompletion/rptools_rpcompletion/6.5.0+galaxy0

Outputs

ID Name Description Type
Complete Reactions #main/Complete Reactions n/a
  • File
RP2paths (compounds) #main/RP2paths (compounds) n/a
  • File
RP2paths (pathways) #main/RP2paths (pathways) n/a
  • File
RRules Parser(retro, d=['2', '4', '6', '8', '10', '12', '14', '16']) #main/RRules Parser(retro, d=['2', '4', '6', '8', '10', '12', '14', '16']) n/a
  • File
Retropath2.0 #main/Retropath2.0 n/a
  • File
_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File
iML1515 #main/iML1515 n/a
  • File

Version History

Version 1 (earliest) Created 24th Oct 2025 at 12:37 by ramiz khaled

Initial commit


Frozen Version-1 637437c
help Creators and Submitter
Creators
Not specified
Additional credit

BioRetroSynth

Submitter
License
MIT License (MIT)
Activity

Views: 65   Downloads: 11   Runs: 0

Created: 24th Oct 2025 at 12:37

Annotated Properties
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help Attributions

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Total size: 777 KB
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