Genetic Design (BASIC Assembly)
Version 1

Download RO-Crate Run on Galaxy
Workflow Type: Galaxy

This workflow encodes the top-ranking predicted pathways from the previous workflow into plasmids intended to be expressed in the specified organism. BASIC is used as assembly method.

SEEK ID: https://workflowhub.eu/workflows/2009?version=1

Inputs

ID Name Description Type
DNA-Bot settings #main/DNA-Bot settings n/a
  • File
Enzyme taxon IDs #main/Enzyme taxon IDs n/a
  • string
Host taxon ID #main/Host taxon ID n/a
  • int
Linkers and user parts #main/Linkers and user parts n/a
  • File
Pathway (SBML) #main/Pathway (SBML) n/a
  • File

Steps

ID Name Description
5 Selenzyme toolshed.g2.bx.psu.edu/repos/tduigou/selenzy/selenzy-wrapper/0.2.0
6 BasicDesign toolshed.g2.bx.psu.edu/repos/tduigou/rpbasicdesign/rpbasicdesign/0.3.4
7 DNA-Bot toolshed.g2.bx.psu.edu/repos/tduigou/dnabot/dnabot/3.1.0

Outputs

ID Name Description Type
Uniprot IDs #main/Uniprot IDs n/a
  • File
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File
dnabot_scripts #main/dnabot_scripts n/a
  • File

Version History

Version 1 (earliest) Created 24th Oct 2025 at 15:08 by ramiz khaled

Initial commit


Frozen Version-1 9f79bf3
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License
Apache License 2.0 (Apache-2.0)
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Views: 82   Downloads: 16   Runs: 0

Created: 24th Oct 2025 at 15:08

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