Workflow Type: Galaxy
Open
Work-in-progress
Performs Long Read assembly using PacBio data and Hifiasm. Part of VGP assembly pipeline. This workflow generate a phased assembly.
Inputs
ID | Name | Description | Type |
---|---|---|---|
HiC forward reads | n/a | n/a |
|
HiC reverse reads | n/a | n/a |
|
Meryl Database | n/a | Database Generated from the "Meryl database creation" workflow. |
|
Pacbio Reads Collection | n/a | Collection of Long reads in fastq format. |
|
Steps
ID | Name | Description |
---|---|---|
10_Hifiasm | n/a | n/a |
11_Search in textfiles | n/a | n/a |
12_GFA to FASTA | n/a | n/a |
13_GFA to FASTA | n/a | n/a |
14_gfastats | n/a | n/a |
15_gfastats | n/a | n/a |
16_Replace Text | n/a | n/a |
17_Busco | n/a | n/a |
18_Merqury | n/a | n/a |
19_Busco | n/a | n/a |
20_Convert | n/a | n/a |
21_Cut | n/a | n/a |
22_Parse parameter value | n/a | n/a |
23_Quast | n/a | n/a |
24_Quast | n/a | n/a |
25_gfastats | n/a | n/a |
26_gfastats | n/a | n/a |
2_Input parameter | n/a | n/a |
3_Input parameter | n/a | n/a |
4_Input parameter | n/a | n/a |
7_Meryl | n/a | n/a |
8_Cutadapt | n/a | n/a |
9_GenomeScope | n/a | n/a |
Version History
Version 1 (earliest) Created 5th Apr 2022 at 22:55 by Cristóbal Gallardo
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Created: 5th Apr 2022 at 22:55

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