Workflow Type: Galaxy
Open
Work-in-progress
Purge Phased assembly of duplications and overlaps. Include purge steps for Primary and Alternate assemblies.
Click and drag the diagram to pan, double click or use the controls to zoom.
Inputs
ID | Name | Description | Type |
---|---|---|---|
Genomescope model parameters | n/a | n/a |
|
Hifiasm Alternate assembly | n/a | From the Hifiasm workflow. In fasta format. |
|
Hifiasm Primary assembly | n/a | From the Hifiasm workflow. In fasta format. |
|
Pacbio Reads Collection - Trimmed | n/a | Collection of trimmed reads (from cutadapt in the Hifiasm workflow) in fastq format. |
|
Steps
ID | Name | Description |
---|---|---|
10_Cut | n/a | n/a |
11_Parse parameter value | n/a | n/a |
12_Parse parameter value | n/a | n/a |
13_Purge overlaps | n/a | n/a |
14_Purge overlaps | n/a | n/a |
15_Purge overlaps | n/a | n/a |
16_Concatenate datasets | n/a | n/a |
17_Map with minimap2 | n/a | n/a |
18_Purge overlaps | n/a | n/a |
19_Purge overlaps | n/a | n/a |
20_Map with minimap2 | n/a | n/a |
21_Purge overlaps | n/a | n/a |
22_Purge overlaps | n/a | n/a |
4_Map with minimap2 | n/a | n/a |
5_Purge overlaps | n/a | n/a |
6_Compute | n/a | n/a |
7_Map with minimap2 | n/a | n/a |
8_Compute | n/a | n/a |
9_Cut | n/a | n/a |
Version History
Version 1 (earliest) Created 5th Apr 2022 at 23:16 by Cristóbal Gallardo
Initial commit
Open
master
fad93d2
Creators and Submitter
Creator
Submitter
Activity
Views: 3591 Downloads: 235 Runs: 0
Created: 5th Apr 2022 at 23:16
Attributions
None