Workflow Type: Galaxy
Open
Work-in-progress
Purge Phased assembly of duplications and overlaps. Include purge steps for Primary and Alternate assemblies.
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Inputs
ID | Name | Description | Type |
---|---|---|---|
Genomescope model parameters | n/a | n/a |
|
Hifiasm Alternate assembly | n/a | From the Hifiasm workflow. In fasta format. |
|
Hifiasm Primary assembly | n/a | From the Hifiasm workflow. In fasta format. |
|
Pacbio Reads Collection - Trimmed | n/a | Collection of trimmed reads (from cutadapt in the Hifiasm workflow) in fastq format. |
|
Steps
ID | Name | Description |
---|---|---|
10_Cut | n/a | n/a |
11_Parse parameter value | n/a | n/a |
12_Parse parameter value | n/a | n/a |
13_Purge overlaps | n/a | n/a |
14_Purge overlaps | n/a | n/a |
15_Purge overlaps | n/a | n/a |
16_Concatenate datasets | n/a | n/a |
17_Map with minimap2 | n/a | n/a |
18_Purge overlaps | n/a | n/a |
19_Purge overlaps | n/a | n/a |
20_Map with minimap2 | n/a | n/a |
21_Purge overlaps | n/a | n/a |
22_Purge overlaps | n/a | n/a |
4_Map with minimap2 | n/a | n/a |
5_Purge overlaps | n/a | n/a |
6_Compute | n/a | n/a |
7_Map with minimap2 | n/a | n/a |
8_Compute | n/a | n/a |
9_Cut | n/a | n/a |
Version History
Version 1 (earliest) Created 5th Apr 2022 at 23:16 by Cristóbal Gallardo
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Created: 5th Apr 2022 at 23:16
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