Workflow Type: Galaxy
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An example workflow to allow users to run the Specimen Data Refinery tools on data provided in an input CSV file.
Steps
ID | Name | Description |
---|---|---|
3 | Remove header | Remove beginning1 |
4 | Split file | toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.0 |
5 | Create specimen data object from csv | sdr_create_sdo_from_csv |
6 | Filter failed datasets | __FILTER_FAILED_DATASETS__ |
7 | Extract file name | toolshed.g2.bx.psu.edu/repos/iuc/jq/jq/1.0 |
8 | DLA - detect regions | sdr_teklia_worker_dla |
9 | DLA - detect text lines | sdr_teklia_worker_dla |
10 | SDR Teklia worker-htr | sdr_teklia_worker_htr |
11 | SDR Teklia worker-ner | sdr_teklia_worker_ner |
12 | Bundle Collection | toolshed.g2.bx.psu.edu/repos/nml/bundle_collections/bundle_collection/1.3.0 |
Version History
Version 2 (latest) Created 14th Dec 2022 at 16:05 by Oliver Woolland
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Version 1 (earliest) Created 8th Jul 2022 at 14:00 by Oliver Woolland
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Citation
Brack, P., Woolland, O., & Livermore, L. (2022). De novo digitisation. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.373.1
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Views: 3698 Downloads: 365 Runs: 0
Created: 8th Jul 2022 at 14:00
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