Workflow Type: Galaxy
Frozen
Work-in-progress
An example workflow for the Specimen Data Refinery tool, allowing an individual tool to be used
Steps
ID | Name | Description |
---|---|---|
1 | Remove header | Remove beginning1 |
2 | Split file | toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.0 |
3 | Create specimen data object from csv | sdr_create_sdo_from_csv |
4 | Filter failed datasets | __FILTER_FAILED_DATASETS__ |
5 | JQ | toolshed.g2.bx.psu.edu/repos/iuc/jq/jq/1.0 |
6 | DLA - detect text lines | sdr_teklia_worker_dla |
7 | SDR Teklia worker-htr | sdr_teklia_worker_htr |
8 | Bundle Collection | toolshed.g2.bx.psu.edu/repos/nml/bundle_collections/bundle_collection/1.3.0 |
Version History
Version 1 (earliest) Created 8th Jul 2022 at 14:05 by Oliver Woolland
Initial commit
Frozen
Version-1
5e52f5b
Creators and Submitter
Creators
Additional credit
Oliver Woolland
Submitter
Citation
Livermore, L., & Woolland, O. (2022). HTR-Collections-test. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.375.1
Activity
Views: 3470 Downloads: 243 Runs: 0
Created: 8th Jul 2022 at 14:05
Attributions
None