Workflow Type: Galaxy
Open
Stable
Workflow for the GTN training "Antibiotic resistance detection"
Inputs
ID | Name | Description | Type |
---|---|---|---|
Plasmids | Plasmids | n/a |
|
Steps
ID | Name | Description |
---|---|---|
1 | NanoPlot | toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1 |
10 | NanoPlot | toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1 |
11 | Map with minimap2 | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17 |
12 | Racon | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.3.1.1 |
2 | Map with minimap2 | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17 |
3 | Create assemblies with Unicycler | toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0 |
4 | miniasm | toolshed.g2.bx.psu.edu/repos/iuc/miniasm/miniasm/0.2+galaxy0 |
5 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0 |
6 | PlasFlow | toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0 |
7 | staramr | toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.5.1 |
8 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0 |
9 | GFA to FASTA | toolshed.g2.bx.psu.edu/repos/iuc/gfa_to_fa/gfa_to_fa/0.1.0 |
Version History
Version 1 (earliest) Created 24th Nov 2022 at 13:28 by Saskia Hiltemann
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d5cadd9
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Views: 3052 Downloads: 208 Runs: 0
Created: 24th Nov 2022 at 13:28
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