GTN Training - Antibiotic Resistance Detection
Version 1

Workflow Type: Galaxy
Stable

Workflow for the GTN training "Antibiotic resistance detection"

Inputs

ID Name Description Type
Plasmids Plasmids n/a
  • File[]

Steps

ID Name Description
1 NanoPlot toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1
10 NanoPlot toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1
11 Map with minimap2 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17
12 Racon toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.3.1.1
2 Map with minimap2 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17
3 Create assemblies with Unicycler toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0
4 miniasm toolshed.g2.bx.psu.edu/repos/iuc/miniasm/miniasm/0.2+galaxy0
5 Bandage Image toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0
6 PlasFlow toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0
7 staramr toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.5.1
8 Bandage Image toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0
9 GFA to FASTA toolshed.g2.bx.psu.edu/repos/iuc/gfa_to_fa/gfa_to_fa/0.1.0

Version History

Version 1 (earliest) Created 24th Nov 2022 at 13:28 by Saskia Hiltemann

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Created: 24th Nov 2022 at 13:28

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