StringTie workflow Version 1
Download RO-Crate
Run on GalaxyAbstract CWL Automatically generated from the Galaxy workflow file: Copy of Genome-wide alternative splicing analysis
Click and drag the diagram to pan, double click or use the controls to zoom.
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Genome annotation | n/a | n/a |
|
| Reference genome | n/a | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 10_IsoformSwitchAnalyzeR | n/a | n/a |
| 1_RNA STAR | n/a | n/a |
| 3_StringTie | n/a | n/a |
| 4_StringTie merge | n/a | n/a |
| 5_gffread | n/a | n/a |
| 6_StringTie | n/a | n/a |
| 7_Extract element identifiers | n/a | n/a |
| 8_Search in textfiles | n/a | n/a |
| 9_Filter collection | n/a | n/a |
Version History
Version 1 (earliest) Created 25th May 2023 at 00:15 by Cristóbal Gallardo
Initial commit
Open
master3609e47
Creators and Submitter
Views: 4372 Downloads: 262 Runs: 0
Created: 25th May 2023 at 00:15
TagsThis item has not yet been tagged.
AttributionsNone
Related items
https://orcid.org/0000-0002-5752-2155
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run ...
Teams: Galaxy Training Network
Web page: https://galaxyproject.org/
The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
