Genomics - Assembly of the genome sequence
Version 1

Workflow Type: Galaxy

This workflow uses Illumina and Oxford Nanopore reads that were pre-processed to remove human-derived sequences. Two assembly tools are used: spades and unicycler. In addition to assemblies (actual sequences) the two tools produce assembly graphs that can be used for visualization of assembly with bandage. More info can be found at https://covid19.galaxyproject.org/genomics/

Click and drag the diagram to pan, double click or use the controls to zoom.

SEEK ID: https://workflowhub.eu/workflows/5?version=1

Inputs

ID	Name	Description	Type
0_Input Dataset	n/a	n/a	File
1_Input Dataset	n/a	n/a	File
2_Input Dataset	n/a	n/a	File

Steps

ID	Name	Description
3_Create assemblies with Unicycler	n/a	n/a
4_SPAdes	n/a	n/a
5_Bandage Info	n/a	n/a
6_Bandage Image	n/a	n/a
7_Bandage Image	n/a	n/a
8_Bandage Info	n/a	n/a

Version History

Version 1 (earliest) Created 10th Apr 2020 at 13:32 by Bert Droesbeke

Added/updated 3 files

Open master e25cdfa

Creators and Submitter

Creators

Not specified

Additional credit

Dannon Baker, Marius van den Beek, Dave Bouvier, John Chilton, Nate Coraor, Frederik Coppens, Bert Droesbeke, Ignacio Eguinoa, Simon Gladman, Björn Grüning, Delphine Larivière, Gildas Le Corguillé, Andrew Lonie, Nicholas Keener, Sergei Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver

Submitter

Bert Droesbeke

License

MIT License

Activity

Views: 4244 Downloads: 739 Runs: 0

Created: 10th Apr 2020 at 13:32

Genomics - Assembly of the genome sequence Version 1