Workflows

What is a Workflow?
178 Workflows visible to you, out of a total of 178
qcxms-sdf/main

Workflow to predict EI mass spectra using QCxMS starting from a single SDF file, containing the 3D coordinates of all atoms in the molecule. These files can typically be obtained from PubChem.

Type: Galaxy

Creators: Helge Hecht, RECETOX

Submitter: WorkflowHub Bot

nf-core/demultiplex

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Type: Nextflow

Creators: Chelsea Sawyer, Edmund Miller, Matthias De Smet

Submitter: WorkflowHub Bot

gromacs-dctmd/main

Perform dcTMD free energy simulations and calculations

Type: Galaxy

Creators: Simon Bray, Simon Bray

Submitter: WorkflowHub Bot

nf-core/hlatyping

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Type: Nextflow

Creators: Christopher Mohr, Alexander Peltzer, Sven Fillinger

Submitter: WorkflowHub Bot

tissue-microarray-analysis/main

Complete multiplex tissue image (MTI) analysis pipeline for tissue microarray (TMA) data imaged using cyclic immunofluorescence: Performs illumination correction, stitching and registration, and tissue microarray segmentation. Tissue-segmented images undergo nuclear segmentation, cell/nuclei feature quantification (mean marker intensities, cell coordinates, and morphological features), and cell phenotyping. Produces outputs that are compatible with downstream single-cell/spatial analysis and ...

Type: Galaxy

Creator: Cameron Watson

Submitter: WorkflowHub Bot

nf-core/fastquorum

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Type: Nextflow

Creator: Nils Homer

Submitter: WorkflowHub Bot

nf-core/rnavar

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Type: Nextflow

Creators: @praveenraj2018 , @praveenraj2018

Submitter: WorkflowHub Bot

nf-core/ampliseq

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Type: Nextflow

Creators: Daniel Straub, Alexander Peltzer

Submitter: WorkflowHub Bot

hi-c-contact-map-for-assembly-manual-curation/main

This workflow generates Hi-C contact maps for genome assemblies in the Pretext format. It is compatible with one or 2 haplotypes. It includes tracks for PacBio read coverage, Gaps, and telomeres. The Pretext files can be open in PretextView for the manual curation of genome assemblies.

Type: Galaxy

Creators: Patrik Smeds, Delphine Lariviere

Submitter: WorkflowHub Bot

Plot-Nx-Size/main

Generate Nx and Size plot for multiple assemblies

Inputs

Collection of fasta files. The name of each item in the collection will be used as label for the Nx and Size plots.

Outputs

  1. Nx plot
  2. Size plot

Type: Galaxy

Creators: Delphine Lariviere, VGP

Submitter: WorkflowHub Bot

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