BioDT
The Biodiversity Digital Twin prototype provides advanced models for simulation and prediction capabilities, through practical use cases addressing critical issues related to global biodiversity dynamics.
BioDT exploits the LUMI Supercomputer and employs FAIR data combined with digital infrastructure, predictive modelling and AI solutions, facilitating evidence-based solutions for biodiversity protection and restoration.
Funded by Horizon Europe call HORIZON-INFRA-2021-TECH-01-01 101057437, the project responds to key EU and international policy initiatives, including the EU Biodiversity Strategy 2030, EU Green Deal, UN Sustainable Development Goals, Destination Earth.
Web page: https://biodt.eu/
Funding codes:- https://doi.org/10.3030/101057437
- https://gtr.ukri.org/projects?ref=10038930
- HORIZON-INFRA-2021-TECH-01-01 101057437
Horizon Europe call HORIZON-INFRA-2021-TECH-01-01 101057437
Related items
Teams: IBISBA Workflows, GalaxyProject SARS-CoV-2, BioBB Building Blocks, Common Workflow Language (CWL) community, BioExcel Best Practice Guides, Specimen Data Refinery, FAIR Computational Workflows, Vertebrate Genomes Pipelines in Galaxy, TRE-FX, EuroScienceGateway, Biodiversity Genomics Europe (general), BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection, BY-COVID (general), BioDT additional pipelines, BioDT Use Case 4.1.1.1 Biodiversity dynamics, BioDT Use Case 4.1.2.2 DNA detected biodiversity, poorly known habitats, BioDT Use Case 4.1.2.1 Crop wild relatives and genetic resources for food security, BioDT Use Case 4.1.3.1 Invasive species, BioDT Use Case 4.1.3.2 Endangered species, BioDT Use Case 4.1.4.1 Disease outbreaks, BioDT Use Case 4.1.4.2 Pollinators, BioDT Use Case 4.1.1.2 Ecosystem services, ELIXIR Training, ELIXIR Tools platform
Organizations: The University of Manchester, ELIXIR-UK
https://orcid.org/0000-0001-9842-9718
BioDT pipelines not associated with one of the BioDT use cases.
Space: BioDT
Public web page: Not specified
Part of T.4.1.1 Species response to environmental change (UFZ, GBIFS, UKCEH, JYU, MLU)
Space: BioDT
Public web page: Not specified
Part of T.4.1.3 Dynamics and threats from and for species of policy concern (UFZ, GBIFS, Naturalis, UKCEH, LifeWatchERIC)
Space: BioDT
Public web page: Not specified
Part of T.4.1.1 Species response to environmental change (UFZ, GBIFS, UKCEH, JYU, MLU)
Space: BioDT
Public web page: Not specified
Part of T.4.1.4 Species interactions with each other and with humans (GBIFS, UFZ, LifeWatchERIC, UiO)
Space: BioDT
Public web page: Not specified
Part of T.4.1.4 Species interactions with each other and with humans (GBIFS, UFZ, LifeWatchERIC, UiO)
Space: BioDT
Public web page: Not specified
Part of T.4.1.3 Dynamics and threats from and for species of policy concern (UFZ, GBIFS, Naturalis, UKCEH, LifeWatchERIC)
Space: BioDT
Public web page: Not specified
Part of T.4.1.2 Genetically detected biodiversity (GBIFS, UKCEH, UiO)
Space: BioDT
Public web page: Not specified
Part of T.4.1.2 Genetically detected biodiversity (GBIFS, UKCEH, UiO)
Space: BioDT
Public web page: Not specified
The BioDT project is producing and maintaining workflows. We need to register those workflows in WorkflowHub:
- To give visibility to the workflows created by the project and by the different networks and communities within the project
- To give visibility to the workflows used by project that were created
- To share workflows across the project, within project networks and externally
- To credit and cite the people making the workflows and the networks to which they ...
External LinkTo make your workflow FAIR (Findable, Accessible, Interoperable, Reusable), register it in WorkflowHub, a workflow registry with rich metadata capture for workflow discovery and sharing, and value-added services, for workflow testing (LifeMonitor), execution and publication.
The EuroScienceGateway, Biodiversity Genomics Europe and BioDT projects will use WorkflowHub to organise, share and publish their workflows.
This was Ask Me Anything and Bring Your Own Workflow (AMA & BYOW) specifically ...
Creators: Nick Juty, Finn Bacall
Submitter: Stian Soiland-Reyes
This is the workflow for the biodiversity component of the cultural ecosystems digital twin
Type: Shell Script
Creators: Simon Rolph, Chris Andrews, Will Bolton, Dylan Carbone, Jan Dick
Submitter: Simon Rolph
This is the workflow for the recreation potential component of the cultural ecosystems digital twin
Type: Shell Script
Creators: Chris Andrews, Will Bolton, Simon Rolph, Dylan Carbone, Jan Dick
Submitter: Simon Rolph
