2 items tagged with 'ChIP'.
ChIP-seq peak-calling and differential analysis pipeline.
Type: Nextflow
Creators: Philip Ewels, Espinosa-Carrasco J, Patel H, Wang C, Ewels P
Submitter: WorkflowHub Bot
Created: 4th Jun 2024 at 11:32, Last updated: 4th Jun 2024 at 11:32
This workflow takes as input SR BAM from ChIP-seq. It calls peaks on each replicate and intersect them. In parallel, each BAM is subsetted to smallest number of reads. Peaks are called using both subsets combined. Only peaks called using a combination of both subsets which have summits intersecting the intersection of both replicates will be kept.
Created: 5th Sep 2023 at 03:01