Workflow Type: Galaxy
Frozen
Frozen
Generate Nx and Size plot for multiple assemblies
Inputs
Collection of fasta files. The name of each item in the collection will be used as label for the Nx and Size plots.
Outputs
- Nx plot
- Size plot
Inputs
ID | Name | Description | Type |
---|---|---|---|
Collection of genomes to plot | #main/Collection of genomes to plot | Name the items inside the collection with the names you want to appear on the plot |
|
Steps
ID | Name | Description |
---|---|---|
1 | gfastats | toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0 |
2 | Sort | sort1 |
3 | Text reformatting | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1 |
4 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0 |
5 | Add column | toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1 |
6 | Parse parameter value | param_value_from_file |
7 | Compose text parameter value | toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1 |
8 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0 |
9 | Add input name as column | toolshed.g2.bx.psu.edu/repos/mvdbeek/add_input_name_as_column/addName/0.2.0 |
10 | Collapse Collection | toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/5.1.0 |
11 | Cut | Cut1 |
12 | Cut | Cut1 |
13 | Nx Plot | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1 |
14 | Size Plot | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
Nx Plot | #main/Nx Plot | n/a |
|
Size Plot | #main/Size Plot | n/a |
|
gfastats data for plotting | #main/gfastats data for plotting | n/a |
|
Version History
v0.1.1 (latest) Created 28th Jun 2024 at 03:01 by WorkflowHub Bot
Updated to v0.1.1
Frozen
v0.1.1
f14dcc4
v0.1 (earliest) Created 24th Jun 2024 at 03:01 by WorkflowHub Bot
Updated to v0.1
Frozen
v0.1
6abb355
Creators and Submitter
Creator
Additional credit
VGP
Submitter
Activity
Views: 1134 Downloads: 213 Runs: 0
Created: 24th Jun 2024 at 03:01
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Attributions
None