Plot-Nx-Size/main
View on GitHub
Download RO-Crate
Run on GalaxyGenerate Nx and Size plot for multiple assemblies
Inputs
Collection of fasta files. The name of each item in the collection will be used as label for the Nx and Size plots.
Outputs
- Nx plot
- Size plot
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Collection of genomes to plot | #main/Collection of genomes to plot | Name the items inside the collection with the names you want to appear on the plot |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | gfastats | toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0 |
| 2 | Sort | sort1 |
| 3 | Text reformatting | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2 |
| 4 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0 |
| 5 | Add column | toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1 |
| 6 | Parse parameter value | param_value_from_file |
| 7 | Compose text parameter value | toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1 |
| 8 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0 |
| 9 | Add input name as column | toolshed.g2.bx.psu.edu/repos/mvdbeek/add_input_name_as_column/addName/0.2.0 |
| 10 | Collapse Collection | toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/5.1.0 |
| 11 | Cut | Cut1 |
| 12 | Cut | Cut1 |
| 13 | Nx Plot | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1 |
| 14 | Size Plot | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Nx Plot | #main/Nx Plot | n/a |
|
| Size Plot | #main/Size Plot | n/a |
|
| gfastats data for plotting | #main/gfastats data for plotting | n/a |
|
Version History
v0.1.8 (latest) Created 26th Aug 2025 at 03:02 by WorkflowHub Bot
Updated to v0.1.8
Frozen
v0.1.8b6095c1
v0.1 (earliest) Created 24th Jun 2024 at 03:01 by WorkflowHub Bot
Updated to v0.1
Frozen
v0.1
6abb355
Creators and Submitter
Views: 5755 Downloads: 8828 Runs: 0
Created: 24th Jun 2024 at 03:01
Last updated: 26th Mar 2025 at 10:06
TagsThis item has not yet been tagged.
AttributionsNone
Related items
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run ...
Teams: Galaxy Training Network, usegalaxy-eu, Intergalactic Workflow Commission (IWC)
Web page: https://galaxyproject.org/
The Intergalactic Workflow Commission releases vetted analysis pipelines for the Galaxy platform.
You can contribute too!
Space: Galaxy
Public web page: https://iwc.galaxyproject.org/
