taxonomy-profiling-and-visualization-with-krona/main
v0.1

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Workflow Type: Galaxy

Tests Passing

Microbiome - Taxonomy Profiling

SEEK ID: https://workflowhub.eu/workflows/1059?version=1

DOI: 10.48546/workflowhub.workflow.1059.1

Inputs

ID	Name	Description	Type
collection_of_preprocessed_samples	#main/collection_of_preprocessed_samples	Output collection from the Nanopore Preprocessing workflow	array containing File
kraken_database	#main/kraken_database	kraken_database_for_user_to_choose	string

Steps

ID	Name	Description
2	Kraken2	toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy1
3	Krakentools: Convert kraken report file	toolshed.g2.bx.psu.edu/repos/iuc/krakentools_kreport2krona/krakentools_kreport2krona/1.2+galaxy1
4	Krona pie chart	toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1+galaxy0

Outputs

ID	Name	Description	Type
converted_kraken_report	#main/converted_kraken_report	n/a	File
kraken2_with_pluspf_database_output	#main/kraken2_with_pluspf_database_output	n/a	File
kraken2_with_pluspf_database_output_report	#main/kraken2_with_pluspf_database_output_report	n/a	File
krona_pie_chart	#main/krona_pie_chart	n/a	File

Version History

v0.1 (earliest) Created 26th Jun 2024 at 03:01 by WorkflowHub Bot

Updated to v0.1

Frozen v0.1 6e33e25

Creators and Submitter

Creators

Engy Nasr
Bérénice Batut
Paul Zierep

Submitter

WorkflowHub Bot

Tools

kraken2

KrakenTools

taxonomy_krona_chart

Citation

Nasr, E., Batut, B., & Zierep, P. (2024). taxonomy-profiling-and-visualization-with-krona/main. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.1059.1

License

MIT License

Activity

Views: 1069 Downloads: 162 Runs: 0

Created: 26th Jun 2024 at 03:01

taxonomy-profiling-and-visualization-with-krona/main v0.1