taxonomy-profiling-and-visualization-with-krona/main
v0.1

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Workflow Type: Galaxy

Microbiome - Taxonomy Profiling

SEEK ID: https://workflowhub.eu/workflows/1059?version=1

Inputs

ID Name Description Type
collection_of_preprocessed_samples #main/collection_of_preprocessed_samples Output collection from the Nanopore Preprocessing workflow
  • array containing
    • File
kraken_database #main/kraken_database kraken_database_for_user_to_choose
  • string

Steps

ID Name Description
2 Kraken2 toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy1
3 Krakentools: Convert kraken report file toolshed.g2.bx.psu.edu/repos/iuc/krakentools_kreport2krona/krakentools_kreport2krona/1.2+galaxy1
4 Krona pie chart toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1+galaxy0

Outputs

ID Name Description Type
converted_kraken_report #main/converted_kraken_report n/a
  • File
kraken2_with_pluspf_database_output #main/kraken2_with_pluspf_database_output n/a
  • File
kraken2_with_pluspf_database_output_report #main/kraken2_with_pluspf_database_output_report n/a
  • File
krona_pie_chart #main/krona_pie_chart n/a
  • File

Version History

v0.1 (earliest) Created 26th Jun 2024 at 03:01 by WorkflowHub Bot

Updated to v0.1


Frozen v0.1 6e33e25
help Creators and Submitter
Creators
  • Engy Nasr
  • Bérénice Batut
  • Paul Zierep
Submitter
Tools
kraken2
KrakenTools
taxonomy_krona_chart
License
MIT License
Activity

Views: 45   Downloads: 8

Created: 26th Jun 2024 at 03:01

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