qiime2-III-VI-downsteam/QIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis
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Workflow Type: Galaxy
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This workflow
- Reconstruct phylogeny (insert fragments in a reference)
- Alpha rarefaction analysis
- Taxonomic analysis
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Feature table | #main/Feature table | Feature table. e.g. from DADA2 |
|
| Maximum depth | #main/Maximum depth | Maximum depth used for the rarefaction analysis (minimum value : 1) |
|
| Metadata | #main/Metadata | Tab separated metadata file |
|
| Minimum depth | #main/Minimum depth | Minimum depth used for the rarefaction analysis (minimum value : 1) |
|
| Representative sequences | #main/Representative sequences | Representative sequences, e.g. from DADA2 |
|
| SEPP fragment insertion reference | #main/SEPP fragment insertion reference | Reference data for the SEPP fragmentation insertion phylogenetic tree generation |
|
| Taxonomic classifier | #main/Taxonomic classifier | Taxonomic classifier (e.g. Greengenes or SILVA) |
|
Steps
| ID | Name | Description |
|---|---|---|
| 7 | Phylogenetic tree for diversity analysis | Phylogenetic tree for diversity analysis |
| 8 | Taxonomic analysis | Taxonomic analysis |
| 9 | Rarefaction | Rarefaction |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Rarefaction curve | #main/Rarefaction curve | n/a |
|
| Rooted tree | #main/Rooted tree | n/a |
|
| Taxa barplot | #main/Taxa barplot | n/a |
|
| Taxonomy classification | #main/Taxonomy classification | n/a |
|
| Taxonomy classification table | #main/Taxonomy classification table | n/a |
|
Version History
v0.1 (earliest) Created 7th Aug 2024 at 03:02 by WorkflowHub Bot
Updated to v0.1
Frozen
v0.176b5394
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Views: 3442 Downloads: 3334 Runs: 0
Created: 7th Aug 2024 at 03:02
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