ProteinID SG PS Tutorial WF datasetCollection 4.0
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Run on GalaxyPeptide and Protein ID using SearchGUI and PeptideShaker
Associated Tutorial
This workflows is part of the tutorial Peptide and Protein ID using SearchGUI and PeptideShaker, available in the GTN
Thanks to...
Tutorial Author(s): Florian Christoph Sigloch, Björn Grüning
Tutorial Contributor(s): Saskia Hiltemann, Nicola Soranzo, Björn Grüning, Melanie Föll, Bérénice Batut, William Durand, Clemens Blank, Florian Christoph Sigloch, Subina Mehta, Niall Beard, Helena Rasche, Martin Čech, Armin Dadras
Funder(s): ELIXIR Europe, de.NBI, University of Freiburg
Steps
| ID | Name | Description |
|---|---|---|
| 2 | PeakPickerHiRes | PeakPickerHiRes |
| 3 | FileConverter | FileConverter |
| 4 | Search GUI | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/2.9.0 |
| 5 | Peptide Shaker | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.11.0 |
| 6 | Select | Output: all identified contaminant proteins Grep1 |
| 7 | Select | Output: all identified non-contaminant proteins Grep1 |
| 8 | Select | Output: identified non-contaminant proteins, validated to be "Confident". Grep1 |
Version History
master
Creators and Submitter
Views: 1163 Downloads: 161 Runs: 0
Created: 2nd Jun 2025 at 10:51
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