MaxQuant MSstatsTMT Training
1.0

Workflow Type: Galaxy

MaxQuant and MSstats for the analysis of TMT data

Associated Tutorial

This workflows is part of the tutorial MaxQuant and MSstats for the analysis of TMT data, available in the GTN

Thanks to...

Tutorial Author(s): Klemens Fröhlich, Melanie Föll, Matthias Fahrner

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
Experimental design template #main/Experimental design template n/a
  • File
Input Dataset Collection #main/Input Dataset Collection n/a
  • array containing
    • File
MSstats annotation file #main/MSstats annotation file n/a
  • File

Steps

ID Name Description
3 MaxQuant toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.17.0+galaxy2
4 MSstatsTMT toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/2.0.0+galaxy0

Outputs

ID Name Description Type
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_11 #main/_anonymous_output_11 n/a
  • File
_anonymous_output_12 #main/_anonymous_output_12 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

1.0 (earliest) Created 2nd Jun 2025 at 10:51 by GTN Bot

Added/updated 4 files


Open master ff9fe23
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Views: 47   Downloads: 4   Runs: 0

Created: 2nd Jun 2025 at 10:51

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