Workflow 5: OTU Clustering [Galaxy Training: 16S Microbial Analysis With Mothur] 1.0
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Run on Galaxy16S Microbial Analysis with mothur (short)
Associated Tutorial
This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN
Thanks to...
Workflow Author(s): Saskia Hiltemann
Tutorial Author(s): Saskia Hiltemann, Bérénice Batut, Dave Clements
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Count Table | #main/Count Table | n/a |
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| Sequences | #main/Sequences | n/a |
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| Taxonomy | #main/Taxonomy | n/a |
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Steps
| ID | Name | Description |
|---|---|---|
| 3 | Remove.groups | toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_groups/mothur_remove_groups/1.39.5.0 |
| 4 | Cluster.split | toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_split/mothur_cluster_split/1.39.5.0 |
| 5 | Make.shared | toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_shared/mothur_make_shared/1.39.5.0 |
| 6 | Classify.otu | toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_otu/mothur_classify_otu/1.39.5.0 |
| 7 | Count.groups | toolshed.g2.bx.psu.edu/repos/iuc/mothur_count_groups/mothur_count_groups/1.39.5.0 |
| 8 | Sub.sample | toolshed.g2.bx.psu.edu/repos/iuc/mothur_sub_sample/mothur_sub_sample/1.39.5.0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
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| _anonymous_output_10 | #main/_anonymous_output_10 | n/a |
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| _anonymous_output_11 | #main/_anonymous_output_11 | n/a |
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| _anonymous_output_12 | #main/_anonymous_output_12 | n/a |
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| _anonymous_output_13 | #main/_anonymous_output_13 | n/a |
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| _anonymous_output_14 | #main/_anonymous_output_14 | n/a |
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| _anonymous_output_15 | #main/_anonymous_output_15 | n/a |
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| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
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| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
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| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
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| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
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| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
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| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
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| _anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
master
Creators and Submitter
Views: 1374 Downloads: 175 Runs: 0
Created: 2nd Jun 2025 at 10:51
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Teams: Galaxy Training Network
Organizations: Galaxy
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