16S_biodiversity_BIOM Version 1
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Run on GalaxyThis is a Galaxy workflow that uses to convert the16S BIOM file to table and figures. It is part of the metaDEGalaxy workflow MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic data.
Steps
| ID | Name | Description |
|---|---|---|
| 0 | Convert BIOM | toolshed.g2.bx.psu.edu/repos/iuc/biom_convert/biom_convert/2.1.5.0 |
| 1 | BIOM metadata | toolshed.g2.bx.psu.edu/repos/iuc/biom_add_metadata/biom_add_metadata/2.1.5.0 |
| 2 | DESeq2 | toolshed.g2.bx.psu.edu/repos/qfabrepo/metadegalaxy_phyloseq_deseq2/phyloseq_DESeq2/1.22.3 |
| 3 | Phyloseq Richness | toolshed.g2.bx.psu.edu/repos/qfabrepo/metadegalaxy_phyloseq_richness/phyloseq_richness/1.22.3.2 |
| 4 | Phyloseq Abundance plot | toolshed.g2.bx.psu.edu/repos/qfabrepo/metadegalaxy_phyloseq_abundance_factor/phyloseq_abundance/1.22.3.3 |
| 5 | Phyloseq Abundance Taxonomy | toolshed.g2.bx.psu.edu/repos/qfabrepo/metadegalaxy_phyloseq_abundance_taxonomy/phyloseq_taxonomy/1.22.3.3 |
| 6 | Symmetric Plot | toolshed.g2.bx.psu.edu/repos/qfabrepo/metadegalaxy_symmetric_plot/symmetricPlot/1.0.1 |
| 7 | Phyloseq Network Plot | toolshed.g2.bx.psu.edu/repos/qfabrepo/metadegalaxy_phyloseq_net/phyloseq_net/1.24.2 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_1 | _anonymous_output_1 | n/a |
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| _anonymous_output_2 | _anonymous_output_2 | n/a |
|
| _anonymous_output_3 | _anonymous_output_3 | n/a |
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| _anonymous_output_4 | _anonymous_output_4 | n/a |
|
| _anonymous_output_5 | _anonymous_output_5 | n/a |
|
Version History
Version 1 (earliest) Created 11th Aug 2021 at 05:12 by Mike Thang
Added/updated 2 files
Open
masterd1c188c
Creators and SubmitterViews: 5002 Downloads: 276 Runs: 1
Created: 11th Aug 2021 at 05:12
Last updated: 11th Aug 2021 at 05:12
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