Workflow Type: Galaxy
Calculating diversity from bracken output
Associated Tutorial
This workflows is part of the tutorial Calculating α and β diversity from microbiome taxonomic data, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Paul Zierep, Sophia Hampe, Bérénice Batut
Tutorial Author(s): Sophia Hampe, Bérénice Batut, Paul Zierep
Tutorial Contributor(s): Bérénice Batut, Paul Zierep, Saskia Hiltemann, Teresa Müller, Deepti Varshney, Sophia Hampe
Inputs
ID | Name | Description | Type |
---|---|---|---|
Input Dataset Collection | #main/Input Dataset Collection | n/a |
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Steps
ID | Name | Description |
---|---|---|
1 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
2 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
3 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
4 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
5 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
6 | Krakentools: calculates beta diversity (Bray-Curtis dissimilarity) | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_beta_diversity/krakentools_beta_diversity/1.2+galaxy1 |
Version History

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Views: 45 Downloads: 4 Runs: 0
Created: 2nd Jun 2025 at 10:52

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