Calculating diversity from microbiome taxonomic data
1.0

Workflow Type: Galaxy

Calculating diversity from bracken output

Associated Tutorial

This workflows is part of the tutorial Calculating α and β diversity from microbiome taxonomic data, available in the GTN

Features

Thanks to...

Workflow Author(s): Paul Zierep, Sophia Hampe, Bérénice Batut

Tutorial Author(s): Sophia Hampe, Bérénice Batut, Paul Zierep

Tutorial Contributor(s): Bérénice Batut, Paul Zierep, Saskia Hiltemann, Teresa Müller, Deepti Varshney, Sophia Hampe

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Inputs

ID Name Description Type
Input Dataset Collection #main/Input Dataset Collection n/a
  • array containing
    • File

Steps

ID Name Description
1 Krakentools: Calculates alpha diversity toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1
2 Krakentools: Calculates alpha diversity toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1
3 Krakentools: Calculates alpha diversity toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1
4 Krakentools: Calculates alpha diversity toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1
5 Krakentools: Calculates alpha diversity toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1
6 Krakentools: calculates beta diversity (Bray-Curtis dissimilarity) toolshed.g2.bx.psu.edu/repos/iuc/krakentools_beta_diversity/krakentools_beta_diversity/1.2+galaxy1

Version History

1.0 (earliest) Created 2nd Jun 2025 at 10:52 by GTN Bot

Added/updated 4 files


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Created: 2nd Jun 2025 at 10:52

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