Calculating diversity from microbiome taxonomic data 1.0
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Run on GalaxyCalculating diversity from bracken output
Associated Tutorial
This workflows is part of the tutorial Calculating α and β diversity from microbiome taxonomic data, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Paul Zierep, Sophia Hampe, Bérénice Batut
Tutorial Author(s): Sophia Hampe, Bérénice Batut, Paul Zierep
Tutorial Contributor(s): Bérénice Batut, Paul Zierep, Saskia Hiltemann, Teresa Müller, Deepti Varshney, Sophia Hampe
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Input Dataset Collection | #main/Input Dataset Collection | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
| 2 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
| 3 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
| 4 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
| 5 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
| 6 | Krakentools: calculates beta diversity (Bray-Curtis dissimilarity) | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_beta_diversity/krakentools_beta_diversity/1.2+galaxy1 |
Version History
master
Creators and Submitter
Views: 1114 Downloads: 158 Runs: 1
Created: 2nd Jun 2025 at 10:52
AttributionsNone
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Teams: Galaxy Training Network
Organizations: Galaxy
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