Workflow Type: Galaxy
Interpreting MaxQuant data using MSstats involves applying a rigorous statistical framework to glean meaningful insights from quantitative proteomic datasets
Associated Tutorial
This workflows is part of the tutorial Clinical Metaproteomics 5: Data Interpretation, available in the GTN
Thanks to...
Workflow Author(s): Subina Mehta
Tutorial Author(s): Subina Mehta, Katherine Do, Dechen Bhuming
Tutorial Contributor(s): Pratik Jagtap, Timothy J. Griffin, Bérénice Batut, Helena Rasche, Saskia Hiltemann, Björn Grüning, Subina Mehta
Inputs
ID | Name | Description | Type |
---|---|---|---|
Annotation.txt | Annotation.txt | n/a |
|
Comparison Matrix | Comparison Matrix | n/a |
|
MaxQuant Evidence | MaxQuant Evidence | n/a |
|
MaxQuant Protein Groups | MaxQuant Protein Groups | n/a |
|
Quantified Peptides | Quantified Peptides | n/a |
|
Steps
ID | Name | Description |
---|---|---|
5 | Unipept | toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.5.1 |
6 | Microbial Proteins | Grep1 |
7 | Select | Grep1 |
8 | MSstatsTMT | toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/2.0.0+galaxy1 |
9 | HUMAN-Proteins | Grep1 |
10 | MSstatsTMT | toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/2.0.0+galaxy1 |
Version History

Creators
Not specifiedSubmitter
Discussion Channel
Activity
Views: 47 Downloads: 6 Runs: 0
Created: 2nd Jun 2025 at 10:53


None