Proteomics: Peptide and Protein ID using OpenMS
6.0

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Workflow Type: Galaxy

Peptide and Protein ID using OpenMS tools

Associated Tutorial

This workflows is part of the tutorial Peptide and Protein ID using OpenMS tools, available in the GTN

Thanks to...

Tutorial Author(s): Florian Christoph Sigloch, Björn Grüning

Tutorial Contributor(s): Saskia Hiltemann, Nicola Soranzo, Björn Grüning, Bérénice Batut, Helena Rasche, Melanie Föll, Clemens Blank, Florian Christoph Sigloch, Niall Beard, Martin Čech, Armin Dadras

Funder(s): ELIXIR Europe, de.NBI, University of Freiburg

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SEEK ID: https://workflowhub.eu/workflows/1446?version=1

Inputs

ID Name Description Type
fasta input #main/fasta input n/a
  • File
mzml input #main/mzml input n/a
  • File

Steps

ID Name Description
2 PeakPickerHiRes toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.3.0
3 XTandemAdapter toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.6+galaxy0
4 FileInfo toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.6+galaxy0
5 PeptideIndexer toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.6+galaxy0
6 IDPosteriorErrorProbability toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.6+galaxy0
7 FalseDiscoveryRate toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.6+galaxy0
8 IDScoreSwitcher toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idscoreswitcher/IDScoreSwitcher/2.6+galaxy0
9 FileInfo toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.6+galaxy0
10 FidoAdapter toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.6+galaxy0
11 FalseDiscoveryRate toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.6+galaxy0
12 FileInfo toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.6+galaxy0
13 TextExporter toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.6+galaxy0
14 Select Grep1
15 Select Grep1

Outputs

ID Name Description Type
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_11 #main/_anonymous_output_11 n/a
  • File
_anonymous_output_12 #main/_anonymous_output_12 n/a
  • File
_anonymous_output_13 #main/_anonymous_output_13 n/a
  • File
_anonymous_output_14 #main/_anonymous_output_14 n/a
  • File
_anonymous_output_15 #main/_anonymous_output_15 n/a
  • File
_anonymous_output_16 #main/_anonymous_output_16 n/a
  • File
_anonymous_output_3 #main/_anonymous_output_3 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

6.0 (earliest) Created 2nd Jun 2025 at 10:53 by GTN Bot

Added/updated 4 files


Open master 725287f
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Views: 1161   Downloads: 159   Runs: 0

Created: 2nd Jun 2025 at 10:53

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