Peptide And Protein ID Via OMS Using Two Search Engines
4.0

Workflow Type: Galaxy

Peptide and Protein ID using OpenMS tools

Associated Tutorial

This workflows is part of the tutorial Peptide and Protein ID using OpenMS tools, available in the GTN

Thanks to...

Tutorial Author(s): Florian Christoph Sigloch, Björn Grüning

Tutorial Contributor(s): Saskia Hiltemann, Nicola Soranzo, Björn Grüning, Bérénice Batut, Helena Rasche, Melanie Föll, Clemens Blank, Florian Christoph Sigloch, Niall Beard, Martin Čech, Armin Dadras

Funder(s): ELIXIR Europe, de.NBI, University of Freiburg

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
Human_database_including_decoys #main/Human_database_including_decoys n/a
  • File
mzML_test_dataset #main/mzML_test_dataset n/a
  • File

Steps

ID Name Description
2 XTandemAdapter toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.2.0.1
3 MSGFPlusAdapter toolshed.g2.bx.psu.edu/repos/galaxyp/openms_msgfplusadapter/MSGFPlusAdapter/2.2.0
4 IDPosteriorErrorProbability toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.2.0
5 IDPosteriorErrorProbability toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.2.0
6 IDMerger toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmerger/IDMerger/2.2.0
7 ConsensusID toolshed.g2.bx.psu.edu/repos/galaxyp/openms_consensusid/ConsensusID/2.2.0
8 PeptideIndexer toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.2.0
9 FalseDiscoveryRate toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.2.0
10 IDScoreSwitcher toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idscoreswitcher/IDScoreSwitcher/2.2.0
11 FileInfo toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.2.0
12 FidoAdapter toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.2.0.1
13 FalseDiscoveryRate toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.2.0
14 IDFilter toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.2.0
15 FileInfo toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.2.0

Outputs

ID Name Description Type
_anonymous_output_3 #main/_anonymous_output_3 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File

Version History

4.0 (earliest) Created 2nd Jun 2025 at 10:53 by GTN Bot

Added/updated 4 files


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Created: 2nd Jun 2025 at 10:53

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