MS Imaging Loading Exploring Data 4.0
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Run on GalaxyMass spectrometry imaging: Loading and exploring MSI data
Associated Tutorial
This workflows is part of the tutorial Mass spectrometry imaging: Loading and exploring MSI data, available in the GTN
Thanks to...
Tutorial Author(s): Melanie Föll, Björn Grüning
Tutorial Contributor(s): Saskia Hiltemann, Bérénice Batut, Björn Grüning, Nicola Soranzo, Helena Rasche, Melanie Föll, Martin Čech, Armin Dadras
Funder(s): ELIXIR Europe, de.NBI, University of Freiburg
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| internal calibrants.tab | internal calibrants.tab | n/a |
|
| mouse_kidney_cut.i | mouse_kidney_cut.i | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | MSI data exporter | toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_data_exporter/cardinal_data_exporter/1.12.1.1 |
| 3 | MSI Qualitycontrol | toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_quality_report/cardinal_quality_report/1.12.1.2 |
| 4 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 5 | Select | Grep1 |
Version History
master
Creators and Submitter
Views: 1147 Downloads: 155 Runs: 0
Created: 2nd Jun 2025 at 10:54
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