WGS Part In "Analyses Of Metagenomics Data - The Global Picture" 1.0
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Associated Tutorial
This workflows is part of the tutorial Analyses of metagenomics data - The global picture, available in the GTN
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Tutorial Author(s): Saskia Hiltemann, Bérénice Batut
Steps
| ID | Name | Description |
|---|---|---|
| 1 | MetaPhlAn2 | toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2/metaphlan2/2.6.0.0 |
| 2 | Format MetaPhlAn2 | toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2krona/metaphlan2krona/2.6.0.0 |
| 3 | HUMAnN2 | toolshed.g2.bx.psu.edu/repos/iuc/humann2/humann2/0.9.9.0 |
| 4 | Krona pie chart | toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1 |
| 5 | Renormalize | toolshed.g2.bx.psu.edu/repos/iuc/humann2_renorm_table/humann2_renorm_table/0.9.9.0 |
| 6 | Regroup | toolshed.g2.bx.psu.edu/repos/iuc/humann2_regroup_table/humann2_regroup_table/0.9.9.0 |
| 7 | Renormalize | toolshed.g2.bx.psu.edu/repos/iuc/humann2_renorm_table/humann2_renorm_table/0.9.9.0 |
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Views: 1364 Downloads: 189 Runs: 0
Created: 2nd Jun 2025 at 10:54
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