Amplicon Tutorial 1.0
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Run on GalaxyAnalyses of metagenomics data - The global picture
Associated Tutorial
This workflows is part of the tutorial Analyses of metagenomics data - The global picture, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Saskia Hiltemann, Bérénice Batut
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Anguil Soil Sample | Anguil Soil Sample | n/a |
|
| Pampa Soil Sample | Pampa Soil Sample | n/a |
|
| SILVA Reference | SILVA Reference | n/a |
|
| Trainset PDS alignment | Trainset PDS alignment | n/a |
|
| Trainset PDS taxonomy | Trainset PDS taxonomy | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 5 | Merge.files | toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_files/mothur_merge_files/1.36.1.0 |
| 6 | Make.group | toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_group/mothur_make_group/1.36.1.0 |
| 7 | Unique.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.36.1.0 |
| 8 | Count.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_count_seqs/mothur_count_seqs/1.36.1.0 |
| 9 | Summary.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.36.1.0 |
| 10 | Screen.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_screen_seqs/mothur_screen_seqs/1.36.1.0 |
| 11 | Align.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_seqs/mothur_align_seqs/1.36.1.0 |
| 12 | Summary.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.36.1.0 |
| 13 | Screen.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_screen_seqs/mothur_screen_seqs/1.36.1.0 |
| 14 | Filter.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_seqs/mothur_filter_seqs/1.36.1.0 |
| 15 | Pre.cluster | toolshed.g2.bx.psu.edu/repos/iuc/mothur_pre_cluster/mothur_pre_cluster/1.36.1.0 |
| 16 | Classify.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.36.1.0 |
| 17 | Cluster.split | toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_split/mothur_cluster_split/1.36.1.0 |
| 18 | Make.shared | toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_shared/mothur_make_shared/1.36.1.0 |
| 19 | Classify.otu | toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_otu/mothur_classify_otu/1.36.1.0 |
| 20 | Make.biom | toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_biom/mothur_make_biom/1.36.1.0 |
| 21 | Visualize with Krona | toolshed.g2.bx.psu.edu/repos/saskia-hiltemann/krona_text/krona-text/1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| mothur_make_shared_shared | mothur_make_shared_shared | n/a |
|
Version History
master
Creators and Submitter
Views: 1310 Downloads: 185 Runs: 0
Created: 2nd Jun 2025 at 10:54
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Teams: Galaxy Training Network
Organizations: Galaxy
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