Copy Of GTN Training - Antibiotic Resistance Detection 1.0
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Run on GalaxyAntibiotic resistance detection
Associated Tutorial
This workflows is part of the tutorial Antibiotic resistance detection, available in the GTN
Thanks to...
Tutorial Author(s): Willem de Koning, Saskia Hiltemann
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Plasmids | Plasmids | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | NanoPlot | toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1 |
| 10 | NanoPlot | toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1 |
| 11 | Map with minimap2 | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17 |
| 12 | Racon | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.3.1.1 |
| 2 | Map with minimap2 | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17 |
| 3 | Create assemblies with Unicycler | toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0 |
| 4 | miniasm | toolshed.g2.bx.psu.edu/repos/iuc/miniasm/miniasm/0.2+galaxy0 |
| 5 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0 |
| 6 | PlasFlow | toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0 |
| 7 | staramr | toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.5.1 |
| 8 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0 |
| 9 | GFA to FASTA | toolshed.g2.bx.psu.edu/repos/iuc/gfa_to_fa/gfa_to_fa/0.1.0 |
Version History
master
Creators and Submitter
Views: 1225 Downloads: 157 Runs: 0
Created: 2nd Jun 2025 at 10:55
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Teams: Galaxy Training Network
Organizations: Galaxy
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Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
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The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
